From: Kliuchnikov, Evgenii (
Date: Mon Sep 16 2019 - 17:51:16 CDT

I guess there is no useful information, but

Info) VMD for LINUXAMD64, version 1.9.4a29 (February 25, 2019)
Info) Email questions and bug reports to
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
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Info) Multithreading available, 12 CPUs detected.
Info) CPU features: SSE2 AVX AVX2 FMA
Info) Free system memory: 19GB (60%)
Info) Creating CUDA device pool and initializing hardware...
Info) Detected 1 available CUDA accelerator:
Info) [0] GeForce GTX 1060 6GB 10 SM_6.1 1.84 GHz, 5.9GB RAM, KTO, AE2, ZCP
Warning) Detected X11 'Composite' extension: if incorrect display occurs
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Info) OpenGL renderer: GeForce GTX 1060 6GB/PCIe/SSE2
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Info) Dynamically loaded 3 plugins in directory:
Info) /usr/local/lib/vmd/plugins/LINUXAMD64/molfile
Info) File loading in progress, please wait.
Info) Using plugin pdb for structure file last_frame.pdb
Info) Using plugin pdb for coordinates from file last_frame.pdb
Info) Determining bond structure from distance search ...
Segmentation fault (core dumped)
От: Miro Astore <>
Отправлено: 16 сентября 2019 г. 18:44
Кому: Kliuchnikov, Evgenii <>
Копия: <>
Тема: Re: vmd-l: VMD segmentation fault (core dumped)

Hi, can you post the full error message?

On Tue, 17 Sep 2019 at 04:17, Kliuchnikov, Evgenii <<>> wrote:
Hello VMD users,

I have pdb-file and dcd-trajectory that can be loaded into that pdb. After that I save last frame of this trajectory, but when I try to load this last frame in vmd it gives me segmentation fault error. What could be the problem?