VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Oct 02 2019 - 09:30:35 CDT

Hi,
  It is best to ask questions about details of NAMD on the
NAMD-L mailing list where you have a much higher probability
of getting an answer.

Best,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Oct 02, 2019 at 02:24:17PM +0200, Paula Mihaljevic-Juric wrote:
> Hi!
>
> I would like to understand how does NAMD read mbondi2 radius used for GBIS.
>
> Am I supposed to load this parameters somehow?
>
> Is it possible to change radius for some atoms and how can I do that?
>
> Thank you
> Paula
> 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/