VMD-L Mailing List

From: Francesco Pietra (chiendarret_at_gmail.com)
Date: Sat Feb 01 2020 - 14:59:02 CST

Hello
>From AutoPSF with a RNA-protein assembly (cut to a sphere of 60A radius) I
got the following vecsub error

vecsub: two vectors don't have the same size
vecsub: two vectors don't have the same size
    while executing
"vecsub $x $y"
    (procedure "vecdist" line 2)
    invoked from within
"vecdist $Ccoords $Ncoords"
    (procedure "split_protein_and_water_pdb" line 250)
    invoked from within
"split_protein_and_water_pdb "${basename}-temp.pdb""
    (procedure "::autopsf::aftersels_gui" line 55)
    invoked from within
"::autopsf::aftersels_gui"
    invoked from within
".autopsf.sels.next invoke"
    ("uplevel" body line 1)
    invoked from within
"uplevel #0 [list $w invoke]"
    (procedure "tk::ButtonUp" line 22)
    invoked from within
"tk::ButtonUp .autopsf.sels.next"
    (command bound to event)

Jmol does not find errors.
Which kind of error should I look for in the starting pdb file? Nonmatching
ID?(huge

Thanks for any suggestion
francesco pietra