VMD-L Mailing List

From: miyatake (miyatake_at_riken.jp)
Date: Fri Jul 17 2020 - 02:20:18 CDT

• Next message: William Howe: "Create Binding Pocket of Every PDB File In A Directory Using TCL Scripts and Atomselect Command protein and within 4 of resname LIG"
• Previous message: Daniel Fellner: "FFTK Opt Torsions MM Trajectory"
• In reply to: Daniel Fellner: "FFTK Opt Torsions MM Trajectory"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]

Dear all,

When I run VMD/QwikMD on MacOS Catalina,
I fond the message below, and it stacked,

pfrag: false ofrag: false allfrag: true osel: qwikmd_protein or qwikmd_nucleic or qwikmd_glycan or qwikmd_lipid nfrag: false
Info) Opened coordinate file Test15_formatted_autopsf-temp.pdb for writing.
Info) Finished with coordinate file Test15_formatted_autopsf-temp.pdb.
Reading PDB CONECT records...
Info) Opened coordinate file Test15_formatted_autopsf-temp.xbgf for writing.
Info) Finished with coordinate file Test15_formatted_autopsf-temp.xbgf.
top_all36_prot.rtf top_all36_lipid.rtf top_all36_na.rtf top_all36_carb.rtf top_all36_cgenff.rtf toppar_all36_carb_glycopeptide.str toppar_water_ions_namd.str
DETECTED CHARMM36 NA

What should I do?

           Miyatake

• Next message: William Howe: "Create Binding Pocket of Every PDB File In A Directory Using TCL Scripts and Atomselect Command protein and within 4 of resname LIG"
• Previous message: Daniel Fellner: "FFTK Opt Torsions MM Trajectory"
• In reply to: Daniel Fellner: "FFTK Opt Torsions MM Trajectory"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]