VMD-L Mailing List
From: Ameya Harmalkar (aharmal1_at_jhu.edu)
Date: Sat Aug 01 2020 - 17:58:24 CDT
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Hello,
I am new to VMD and I am trying to generate a trajectory from a set of PDB files. I am able to generate a trajectory and it depicts the transition that I want it to show.
I do, however, wish to color the frames in specific colors i.e. say my PDB file contains 100 models, and I want to color PDBs from 0-49 to red and 50-99 to blue. I have been trying to work around a way to do this, and I am not really sure how to use TCL scripts for the same.
Is there a way to do it? I do realize that there is a RWB type coloring based on trajectories, but i want to highlight specific frames in the movie.
Any guidance/suggestion would be really helpful!
Thanks,
Ameya
Ameya Harmalkar,
Second Year PhD Candidate | Gray Lab
Department of Chemical and Biomolecular Engineering,
Whiting School of Engineering | Johns Hopkins University,
Maryland Hall 303.
- Next message: Francesco Pietra: "Re: Displaying disulfide bonds with updated VMD"
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- Reply: Josh Vermaas: "Re: Color specific frames with specific colors in a trajectory"
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