VMD-L Mailing List

From: Amir Suhail (amirsuhail029_at_gmail.com)
Date: Sun Sep 06 2020 - 06:50:38 CDT

You can use pbc wrap command.

Amir Suhail

On Sun, Sep 6, 2020, 5:18 PM omid gh <molecular.simulator_at_gmail.com> wrote:

> Hi all
> I have ran a simulation by lammps and then I get a lammps data file by
> using write data command. when I tried to view the data file by topo tool
> by "topo readlammpsdata" I fined it the some molecules are out of
> simulation box.
> I guess they are the molecules that moved out of box during the simulation
> . but I want to see all of molecules in simulation box . How can I do that?
> thanks
> omid.
>