From: Ashar Malik (
Date: Mon Sep 14 2020 - 03:48:25 CDT

Not really my area of expertise but have you had a look at:

On Mon, Sep 14, 2020 at 1:28 AM CHIRANJEEV BURMA <> wrote:

> Hi,
> my group and I are very new at using software to perform MD simulations. I
> wanted to ask if VMD is capable of allowing us to modify nucleic acid
> structures. If this is the case, are there any specific extensions/plugins
> to this software that I may need? I was hoping someone could point me in
> the right direction with this. So far my group and I have only been able to
> perform simulations with existing structures from pdb files. I would like
> the ability to modify these structures manually if possible, such as adding
> chains to specific locations on the molecule. Please advise, thanks!