VMD-L Mailing List

From: Peter Freddolino (petefred_at_umich.edu)
Date: Wed Nov 04 2020 - 08:05:49 CST

Can I suggest starting by reading the NAMD manual entry on SMD?
https://www.ks.uiuc.edu/Research/namd/2.13/ug/node46.html

On Tue, Nov 3, 2020 at 9:56 PM <miyatake_at_riken.jp> wrote:

> Dear VMD users,
>
> How can we control the pulling direction in steered MD (SMD)
> In NAMD?
>
> In my MDs, I want to interact two proteins (A + B —> A:B) by
> Controling the direction of pulling of B to A in SMD.
>
> Thank you.
>
> Miyatake
>
>