VMD-L Mailing List

From: Ashma Khan (ashmakhan200_at_gmail.com)
Date: Wed Dec 09 2020 - 23:24:36 CST

no these residue numbers are not present in the original pdb file but when
we have loaded trajectory for making pdb for the selected atoms, these
confusing residue numbers have been obtained.
should we ignore them?

On Thu, Dec 10, 2020 at 10:49 AM Roshan Shrestha <roshanpra_at_gmail.com>
wrote:

> Dear Ashma,
> Were these residue numbers already present in the
> original pdb file?
>
> Best regards
>
> On Thu, 10 Dec 2020, 10:45 Ashma Khan, <ashmakhan200_at_gmail.com> wrote:
>
>> Dear all,
>> We are writing the name OW and within 5 of protein in selected atoms and
>> save coordinates in the pdb format and in the pdb file, there are residue
>> numbers 34f5, 370e, 38a7, 3aef , 2930, 2967. 2930 and 2967 are clear but
>> 34f5, 370e, 38a7 are confusing.
>> Anybody can help me regarding this what are these confusing numbers and
>> how to understand it
>>
>> --
>> Ashma Khan
>> Research Scholar
>> Department of Chemistry
>> AMU, Aligarh
>>
> 

-- 
Ashma Khan
Research Scholar
Department of Chemistry
AMU, Aligarh