From: bora erdemli (
Date: Thu Aug 26 2004 - 14:10:05 CDT

I use the rmsd.tcl script which is in the VMD website.
ýt works well for the whole protein but when I try to
calculate the rmsd of a residue or sidechain of it it
gave me unexpectedly small rmsd .
Is there anybody who has an idea that what the reason
of it and have any sugestion ?
  thanks in advance....

Koc University
Computational Science and Engineering

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