From: Maghsoud, Yazdan (
Date: Sun Aug 28 2022 - 11:08:11 CDT

Dear VMD users.

I have calculated the correlation matrices for my system. Now, I want to show my enzyme color-coded with the dynamic cross-correlation results (which are between -1 to 1). Actually, I want to make a heat map for my enzyme, in which the residues are colored by the dynamic cross-correlation values (e.g., from blue to red for correlated to anticorrelated). It is possible to perform this with Chimera, but I wanted to know if the VMD can also take care of this kind of illustration.

Thanks in advance for your help.