From: I. Camps (
Date: Wed Dec 21 2022 - 13:49:48 CST

Hello, all,

I have three systems (three carbon nanotubes with different chiralities)
that, when visualized in VMD, some bonds are broken, looking as if the
structure has holes.

Visualizing the same structures in other softwares like Maestro, Jmol,
Avogadro and Chimera, the structures look right: all bonds are drawn and
there are no holes.

Is there any place in VMD where we can manually change the threshold bond
parameters to "fix" this issue?

Thanks in advance.