From: Wen Li (
Date: Fri Apr 01 2005 - 11:15:08 CST

Hello Everyone,

I am wondering if there is a User's guide for RMSDTT in vmd - I am trying
to align an MD trajectory to a reference structure which is not in the

>From the window of RMSD trajectory Tool, it seems to me like that the
reference structure comes from a frame of the trajectory. If my reference
is not in the trajectory, how I can make it? My trajectory file was
generated from AMBER.

I appreciate any help.