VMD-L Mailing List

From: Mgr. Lubos Vrbka (lubos.vrbka_at_uochb.cas.cz)
Date: Thu Aug 04 2005 - 10:59:44 CDT

hi guys,

i'm trying to view trajectory from gromacs using vmd. the system is a
slab with 6-center water molecules (O, H, H + 3 extra points). there is
one strange thing. after some time, the trajectory gets distorted - it
looks like extrapoints are not wrapped. when i display only oxygens and
hydrogens, then it's ok.

has anyone encountered this "feature"?

when displayed in ngmx, it seems to be ok, however i'm not sure since
extra points are not connected to the "mother" atom there...

thank you in advance for any hints. best regards,
lubos 

-- 
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Mgr. Lubos Vrbka
Center for Biomolecules and Complex Molecular Systems
Institute of Organic Chemistry and Biochemistry
Academy of Sciences of the Czech Republic
Prague, Czech Republic
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