VMD-L Mailing List
From: Luis Gracia (lug2002_at_med.cornell.edu)
Date: Tue Sep 06 2005 - 13:21:40 CDT
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Hi!
You can use the rmsd plugin for compare two structure or the rmsdtt
plugin to compare structures in a trajectory:
http://physiology.med.cornell.edu/faculty/hweinstein/vmdplugins/rmsdtt/index.html
Best,
Luis
Luis Gracia, PhD
Department of Physiology & Biophysics
Weill Medical College of Cornell University
1300 York Avenue, Box 75
New York, NY 10021
Tel: (212) 746-6375
Fax: (212) 746-8690
lug2002_at_med.cornell.edu
Sergio Anis said the following on 09/06/05 08:11:
> hi everybody:
>
> does anyone have a script to calculate the rmsd of CA for two amino acids (one is the right structure and the other is an attempt to guess its coarse configuration), or something similar I can modify?
>
> I really appreciate it if you can share it with me.
>
> best regards to all
>
> Sergio
>
>
>
- Next message: Hai-Jun Su: "CAVE"
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- In reply to: Sergio Anis: "script"
- Next in thread: Shahid Qamar: "Modified DNA bases PDB files"
- Reply: Shahid Qamar: "Modified DNA bases PDB files"
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