VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Mar 21 2006 - 10:34:01 CST

Hi,
  You'll either need to recompile from source or get a binary from me,
and then set the environment variable VMDMODULATERIBBON to the data
field that you want to use to modulate the ribbon width. I can probably
enable this by default for the next test build I post if you like. In
which case I'll likely have a new build tomorrow sometime.

  John Stone
  vmd_at_ks.uiuc.edu

On Tue, Mar 21, 2006 at 05:09:48PM +0100, spitaleri.andrea_at_hsr.it wrote:
> Hi John,
> yes please let me know how do it (also in which version of vmd)
> Thanks
> Regards
>
> andrea
>
> Andrea Spitaleri
> Dulbecco Telethon Institute
> c/o DIBIT Scientific Institute
> Biomolecular NMR, 1B4
> Via Olgettina 58
> 20132 Milano (Italy)
>
> ----- Original Message -----
> From: John Stone <johns_at_ks.uiuc.edu>
> Date: Tuesday, March 21, 2006 4:50 pm
> Subject: Re: vmd-l: sausage nmr ensemble
>
> >
> > Hi,
> > Actually there's a bit of code I wrote some months ago which
> > modulatesthe width of the NewRibbons representation based on the
> > per-atom value
> > of a selected data field. I've been meaning to make this code
> > availableby changing the graphical and text interfaces to provide
> > a way to turn
> > it on, but haven't gotten around to it yet. At present it can be
> > enabledwith a special environment variable. If you want to give
> > it a try I can
> > tell you how to turn it on.
> >
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> > On Tue, Mar 21, 2006 at 11:09:48AM +0100, spitaleri.andrea_at_hsr.it
> > wrote:> Hi all,
> > > I am aware reading in the vmd webpage that vmd cannot represent
> > an
> > > ensemble of nmr structures as "sausage" (as molmol does).
> > However,
> > > I am wondering if anyone has find a way to work out this
> > problem.
> > > Thanks
> > > Regards
> > >
> > > andrea
> > >
> > > Andrea Spitaleri
> > > Dulbecco Telethon Institute
> > > c/o DIBIT Scientific Institute
> > > Biomolecular NMR, 1B4
> > > Via Olgettina 58
> > > 20132 Milano (Italy)
> > >
> > >
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> > 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078