VMD-L Mailing List
From: Margaret Shun Cheung (mscheung_at_ipst.umd.edu)
Date: Sat Apr 15 2006 - 16:54:25 CDT
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Dear VMD wizards,
I am struggling with the tcl syntax (VMD tkconsole).
I'd like to select water molecules between two residues in a trajectory
(eg 100 frames).
The "within 5 of protein" seems to only select waters around proteins. But
how could I identify water molecules that are enclosed between two or more
residues?
Thank you very much for your help!
Sincerely,
Margaret S. Cheung,
Ph. D. Postdoctoral Fellow,
------------------------------------------------------------
Room 2117 Tel: (301) 405-4892
Inst. for Phys. Sci. & Tech. Fax: (301) 314-9404
University of Maryland http://glue.umd.edu/~mscheung
College Park, MD 20742-2431 email: mscheung_at_ipst.umd.edu
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- Next message: John Stone: "Re: VMD-L: how to select water molecules between two residues in a trajectory."
- Previous message: snoze pa: "Re: namd-l: Generating PSF for 1JNO.pdb chain A"
- Next in thread: John Stone: "Re: VMD-L: how to select water molecules between two residues in a trajectory."
- Reply: John Stone: "Re: VMD-L: how to select water molecules between two residues in a trajectory."
- Reply: Axel Kohlmeyer: "Re: VMD-L: how to select water molecules between two residues in a trajectory."
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