VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu May 18 2006 - 17:57:48 CDT

Hi,
  You can either add the netcdf libraries vmd/lib/netcdf,
or you can edit Make-arch and remove the NETCDFLDFLAGS -lnetcdf line
for LINUXAMD64. I'll be improving this behavior for the next version
when I get a chance to work on it.

  John

On Thu, May 18, 2006 at 03:41:16PM -0700, angel jiménez wrote:
> Dear friends:
>
> When I try to compile VMD from source:
>
> make LINUXAMD64
>
> I get this error:
>
> Building Molecule File Reader plugins
> /usr/bin/ld: cannot find -lnetcdf
> collect2: ld returned 1 exit status
> make[2]: *** [../compile/lib_LINUXAMD64/bin/catdcd4.0/catdcd] Error 1
> /bin/sh: line 0: cd: cliptool: No such file or directory
> /bin/sh: line 0: cd: colorscalebar: No such file or directory
> /bin/sh: line 0: cd: contactmap: No such file or directory
> /bin/sh: line 0: cd: dataimport: No such file or directory
> /bin/sh: line 0: cd: demomaster: No such file or directory
> /bin/sh: line 0: cd: execto
>
> etc....
>
> I guess that netcdf libraries are not found, but what file can I edit for VMD to find them?
>
> What can I do?
>
> Thanks
>
>
>
>
>
> ---------------------------------
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-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078