VMD-L Mailing List
From: Vineet Pande (pande.vin_at_gmail.com)
Date: Sat Jun 03 2006 - 10:58:02 CDT
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Yes. even if use "nucleic not solvent" or "all not solvent" selection while
displaying in *default display*; VMD does not show the molecule completely.
Vineet
--- Vineet Pande, Ph.D. Karolinska Institute, Stockholm On 6/2/06, Leonardo G. Trabuco <ltrabuco_at_ks.uiuc.edu> wrote: > > On Fri, Jun 02, 2006 at 04:17:51PM +0200, Vineet Pande wrote: > > Hi, > > I am using VMD for WIN32, version 1.8.4b10 to display a simple CHARMM > > trajectory of a nucleic acid duplex. However, in the graphics, I can't > see > > one of the terminal nucleotides in both the strands; the MD movie runs > fine > > however. What could be the problem? > > Are you using the keyword 'nucleic' in your atom selection? Which > representation are you using? > > Leo > > -- > Leonardo Giantini Trabuco > Ph.D. candidate > Center for Biophysics and Computational Biology > University of Illinois at Urbana-Champaign >
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