VMD-L Mailing List

From: ziemys_at_ecr6.ohio-state.edu
Date: Mon Jun 05 2006 - 15:36:37 CDT

Hi,

I have a preselected set of atoms. If I apply, e.g.

"atomselect top "protein within $d of index $set",

I will get the list of atoms on the "loose" criteria: atom will be added to the selection if it is within the distance from any atom in my atom set $set (let me know if I am wrong...).

Is there any smart way of "tight" selection, when I want to select or find atom, which abeys the distance criteria for ALL atoms in my $set ?

With best
Arturas