From: Alexandr Isayev (
Date: Thu Nov 02 2006 - 09:18:20 CST


You should take trajectory file (not just one pdb structure) in order
to get a movie. Here is description of XMD files:

It seems you might need to convert trajectory to some common format to
visualize it with VMD.

Hope this will help,

Thursday, November 2, 2006, 8:39:44 AM, you wrote:

0peh> i use XMD(Molecular Dynamics Program) to simulate the motion
0peh> of atom and i got a .pdb file.

0peh> how can i visualize the motion of atom in VMD??
0peh> thank you

Alexandr Isayev,
Graduate Research Assistant, and System Administrator
@ Computational Center for Molecular Structure
and Interactions (CCMSI),
Jackson State University,
Jackson, MS USA
   Tel: +(601) 979-1134
e-mail: alex(at)