From: Per Jr. Greisen (
Date: Thu Jan 04 2007 - 10:55:34 CST


I have a MD simulation and I want to save a structure from the simulation.
So I use the function "Save coordinates..." in VMD and save the structure
I would like but in the generated pdb file there has been added a bond
between to hydrogens on NAD+ which should not be there. Also if I try to
color type nothing changes from color by name. How to fix this problem?
(I have added the NAD+ structure)
Thanks in advance

Best Regards
Per Jr. Greisen