From: Axel Kohlmeyer (
Date: Fri May 04 2007 - 08:53:30 CDT

On Fri, 4 May 2007, nur avneet wrote:

NA> Dear all

NA> Please guide me how can we align a protein normal to the lipid
NA> bilayer and then merge the two to tart a simulation with gromacs.
NA> I have followed EMBO course, 2004 available works well
NA> when i align the protein parallel to the bilayer but when i align
NA> the protein normal to the bilayer it fails.

dear nur,

NA> Can anyone guide me through..

not without _you_ telling us first what you are doing
exactly and where and how it fails. you have to help
us to help you. see e.g.:


NA> regards
NA> nur
NA> ---------------------------------
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Axel Kohlmeyer
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
If you make something idiot-proof, the universe creates a better idiot.