VMD-L Mailing List

From: Vijaya Brahma (vbrahma_at_imtech.res.in)
Date: Thu Jul 26 2007 - 04:25:03 CDT

Dear ALL

I am using VMD 1.8.5 in the Linux version 2.6.9-5.ELsmp.I have solvated my
protein in a water box giving the PDB and PSF input with the boundary of
2.8 and the box size using the molecules' dimension itself without box
padding .

I am having this unique problem, I need a water box size such that it is
only and strictly 8 Ang. away from any side of the molecule. Is it
possible in VMD?? Please let me know the script for the same.

Thanks and Regards, 

-- 
....................................................................
VIJAYA BRAHMA
...................................................................
Research Scholar
Protein Science & Engineering
Institute of Microbial Technology(IMTECH)
Chandigarh
India
http://www.imtech.res.in/bic/phd.html