VMD-L Mailing List
From: Dmitry Lupyan (dmitry.lupyan_at_mssm.edu)
Date: Fri Jan 11 2008 - 15:26:38 CST
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- In reply to: aneesh cna: "problem with superimposing two proteins"
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You need to use MultiSeq plugin, not "RMSD Calc" plugin to align two
proteins that are not identical.
On Jan 10, 2008 6:33 AM, aneesh cna <aneeshcna_at_gmail.com> wrote:
> hello vmd users,
> I would like to superimpose two proteins ( one from
> yeast and other from human) with ~70% amino acid sequence similarity. Both
> proteins are structurally similar but amino acid sequence somewhat
> different. When I am trying to align these two structure in VMD its not
> aligning properly.Is there anyway to superimpose these type of proteins?
>
> regards
> Aneesh
>
>
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- In reply to: aneesh cna: "problem with superimposing two proteins"
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