VMD-L Mailing List

From: aneesh cna (aneeshcna_at_gmail.com)
Date: Thu Jan 10 2008 - 05:33:21 CST

hello vmd users,
                         I would like to superimpose two proteins ( one from
yeast and other from human) with ~70% amino acid sequence similarity. Both
proteins are structurally similar but amino acid sequence somewhat
different. When I am trying to align these two structure in VMD its not
aligning properly.Is there anyway to superimpose these type of proteins?

regards
Aneesh