VMD-L Mailing List
From: Amor San Juan (amorsanjuan_at_yahoo.com)
Date: Sun Nov 07 2010 - 23:32:20 CST
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Hi all,
I hope to receive feedback in regard to this issue.
I issued the command:
same residue as (within 5 of resid 188-199)
The command above has selected nearby residues at 5 angstrom distance from a peptide (resid 188-199). My input was a trajectory file. The output desired is also a trajectory including residues nearest to the peptide.
The output shows complete structure of residue. The problem I face is how to add a terminal carbonyl oxygen to each selected residues ? I understand that vmd is a molecular viewer not an editor, but I want to know if there is a way for this task to be achieved by using it.
Thank You.
-A
- Next message: divya nayar: "fit.tcl"
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