VMD-L Mailing List

From: fariba taghavi (faribataghavifariba_at_gmail.com)
Date: Tue May 08 2012 - 07:06:31 CDT

Dear vmd users,

I have some questions about the diffusion coefficient plug-in in VMD.
I do not know exactly the meaning of "lag times" and "analysis interval"
and their differences in this plug-in.
Why analysis interval should be bigger than time lag?
*What is the "premature conclusions*"?
What does a "subsection of the trajectory" mean in "*Analysis interval*boxes"?
Would you please explain me or introduce me a book or paper about these
concepts?

Any help would be helpful,
Fariba