From: Wang Yi (
Date: Tue May 15 2012 - 13:44:17 CDT

Maybe I misunderstood your question.

Can't you just make two separate selections? One for opaque and the other one being transparent?


Yi (Yves) Wang
Duke University

On 2012-5-15, at 下午1:49, Andrew DeYoung wrote:

> Hi,
> Is it possible to make only certain atoms transparent? I have a PDB file
> with 438 atoms. I would like to display all of them, but I only want to
> draw attention to a small number of them. I would like:
> atoms 73,76,128,133,377,378,379,380,437,438 to be opaque
> and
> all remaining atoms to be transparent (or non-emphasized in some other way).
> Thank you!
> Andrew DeYoung
> Carnegie Mellon University