VMD-L Mailing List

From: Charlesworth, Henry (H.Charlesworth_at_warwick.ac.uk)
Date: Thu Aug 20 2015 - 12:44:22 CDT

Hi,

I have a system which is a graphene sheet and a polymer melt within a periodic box. I want to make a video with the wrapped coordinates but where bonds across the periodic boundary are not displayed. So far I've found a fix that works for just an image (by removing long bonds) but this is no good for a video where the polymers can move back and forward across the periodic boundary. Does anyone have any suggestions?

Thanks, Henry