VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Thu Aug 20 2015 - 14:38:26 CDT

On Thu, Aug 20, 2015 at 1:44 PM, Charlesworth, Henry <
H.Charlesworth_at_warwick.ac.uk> wrote:

> Hi,
>
>
> I have a system which is a graphene sheet and a polymer melt within a
> periodic box. I want to make a video with the wrapped coordinates but where
> bonds across the periodic boundary are not displayed. So far I've found a
> fix that works for just an image (by removing long bonds) but this is no
> good for a video where the polymers can move back and forward across the
> periodic boundary. Does anyone have any suggestions?
>
​have you tried using the DynamicBonds representation?

axel.​

>
> Thanks, Henry
> 

-- 
Dr. Axel Kohlmeyer  akohlmey_at_gmail.com  http://goo.gl/1wk0
College of Science & Technology, Temple University, Philadelphia PA, USA
International Centre for Theoretical Physics, Trieste. Italy.