VMD-L Mailing List

From: Neena Susan Eappen (neena.susaneappen_at_mail.utoronto.ca)
Date: Sat May 11 2019 - 09:05:49 CDT

Hello VMD users,

Is there a way around this problem?

Thanks,
Neena
________________________________
From: Neena Susan Eappen
Sent: Wednesday, May 1, 2019 9:54 PM
To: vmd-l_at_ks.uiuc.edu
Subject: Amide peptide capping group lost in VMD

Hello VMD users,

I uploaded a peptide structure with its trajectory and used H-bond plugin to figure out possible H bonds. The C-terminus has a capping amide group. The H-bond plugin never catches any H-bond information from that capping group. Any insight would be appreciated.

Many thanks,
Neena