From: sting (
Date: Mon May 13 2019 - 07:37:46 CDT

Thank you Kelly! I will try it.

Best regards

At 2019-05-10 12:44:19, "McGuire, Kelly" <> wrote:

You could try using CHARMM GUI multicomponent assembler. I used it to make a water/ethanol solvent mixture for a simulation.

Kelly L. McGuire

PhD Candidate


Department of Physiology and Developmental Biology

Brigham Young University

LSB 3050

Provo, UT 84602

From: <> on behalf of sting <>
Sent: Thursday, May 9, 2019 8:22 PM
Subject: vmd-l: How to add ions to a system with non-water solvents
Dear All,

     I construct a simulation system with formic acid as solvent, and want to ionize this system. I noticed that the VMD plugin Autoionize can only replace water molecules with ion molecules. Is there any other way to ionize my system ? Many thanks for any suggestion !

Best regards