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From: GAGANJYOT KAUR BAKSHI (gaganjyot.bakshi_at_s.amity.edu)
Date: Wed Jun 14 2023 - 14:40:04 CDT
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But how to load .dtr file in maestro?
Get Outlook for iOS<https://urldefense.com/v3/__https://aka.ms/o0ukef__;!!DZ3fjg!5HyBEKmcSIDalPmkAoW1n8huaNiCtWGmwHEMBcYzcq_OCrWyUHXsGnADS3qrjSTj1PrHZH1yhosjtRl42xGaBzRd5kgc48tC$ >
________________________________
From: Diego Gomes <diego.enry_at_gmail.com>
Sent: Thursday, June 15, 2023 1:03:50 AM
To: GAGANJYOT KAUR BAKSHI <gaganjyot.bakshi_at_s.amity.edu>
Cc: vmd-l_at_ks.uiuc.edu <vmd-l_at_ks.uiuc.edu>
Subject: Re: vmd-l: Converting namd trajectory to desmond trajectory
That was answered 15 day ago, make sure to search the list in the future.
https://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/34257.html
-- Since VMD 1.8.7 the Desmond and Maestro plugins are included. A. You may load the .psf (or pdb) and .dcd trajectory B. Save as .dtr (Desmond Trajectory) Done! Made you a short how-to video https://urldefense.com/v3/__https://youtu.be/5iZG7PZ76VY__;!!DZ3fjg!5HyBEKmcSIDalPmkAoW1n8huaNiCtWGmwHEMBcYzcq_OCrWyUHXsGnADS3qrjSTj1PrHZH1yhosjtRl42xGaBzRd5l8ODL__$ Make sure to go through the NAMD/VMD tutorials. https://www.ks.uiuc.edu/Training/Tutorials/ On Tue, Jun 13, 2023 at 3:28 PM GAGANJYOT KAUR BAKSHI <gaganjyot.bakshi_at_s.amity.edu<mailto:gaganjyot.bakshi_at_s.amity.edu>> wrote: Hello guys, I want to analyse my NAMD trajectories in maestro. How can i convert it in desmond or maestro format? Please let me know Thanks Get Outlook for iOS<https://urldefense.com/v3/__https://aka.ms/o0ukef__;!!DZ3fjg!8cF7gyRw5_qPnvOor2oZKzfVyq8JUPNN_m76ZgERI_MlxcoIC4bIIxI3kBBUDa_x-9K5o8Jjrnrf7Xvsh1iDZEFNb3_oNQrR$> -- Diego Enry B. Gomes, PhD Department of Physics Leach Science Center Auburn University dgomes_at_auburn.edu<mailto:dgomes_at_auburn.edu> +1 (334) 559-4016
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