From: Elijah Roberts (
Date: Thu Jan 10 2008 - 17:09:37 CST

Yes, you should be able to do that. Can you be more specific about why
you say it is not aligning properly?


aneesh cna wrote:
> hello vmd users,
> I would like to superimpose two proteins (
> one from yeast and other from human) with ~70% amino acid sequence
> similarity. Both proteins are structurally similar but amino acid
> sequence somewhat different. When I am trying to align these two
> structure in VMD its not aligning properly.Is there anyway to
> superimpose these type of proteins?
> regards
> Aneesh