From: Aaron Oakley (
Date: Tue Dec 14 2010 - 22:17:48 CST

Greetings all,

I have calculated a PMF map for gas binding in a protein
using the ILS tools module in VMD.

I would like to graph PMF vs distance (as shown in
figure 5 in Cohen et al, Biophys. J. 91:1844-1857).
and was wondering about the best way of doing this.

with thanks,